<?xml version="1.0" encoding="UTF-8" standalone="yes"?>
<xnat:Project ID="worc" secondary_ID="WORC" active="1" xmlns:arc="http://nrg.wustl.edu/arc" xmlns:val="http://nrg.wustl.edu/val" xmlns:pipe="http://nrg.wustl.edu/pipe" xmlns:icr="http://icr.ac.uk/icr" xmlns:wrk="http://nrg.wustl.edu/workflow" xmlns:scr="http://nrg.wustl.edu/scr" xmlns:xdat="http://nrg.wustl.edu/security" xmlns:cat="http://nrg.wustl.edu/catalog" xmlns:prov="http://www.nbirn.net/prov" xmlns:xnat="http://nrg.wustl.edu/xnat" xmlns:xnat_a="http://nrg.wustl.edu/xnat_assessments" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://nrg.wustl.edu/workflow https://xnat.health-ri.nl/schemas/workflow.xsd http://nrg.wustl.edu/catalog https://xnat.health-ri.nl/schemas/catalog.xsd http://nrg.wustl.edu/pipe https://xnat.health-ri.nl/schemas/repository.xsd http://nrg.wustl.edu/scr https://xnat.health-ri.nl/schemas/screeningAssessment.xsd http://nrg.wustl.edu/arc https://xnat.health-ri.nl/schemas/project.xsd http://icr.ac.uk/icr https://xnat.health-ri.nl/schemas/roi.xsd http://nrg.wustl.edu/val https://xnat.health-ri.nl/schemas/protocolValidation.xsd http://nrg.wustl.edu/xnat https://xnat.health-ri.nl/schemas/xnat.xsd http://nrg.wustl.edu/xnat_assessments https://xnat.health-ri.nl/schemas/assessments.xsd http://www.nbirn.net/prov https://xnat.health-ri.nl/schemas/birnprov.xsd http://nrg.wustl.edu/security https://xnat.health-ri.nl/schemas/security.xsd">
<xnat:name>WORC</xnat:name>
<xnat:description>This collection contains the WORC Database: imaging data, segmentations, and ground truth labels (e.g. diagnosis, phenotype, genetics) of 930 anonymized patients collected at the Erasmus Medical Center (Rotterdam, the Netherlands) with a variety of tumor types (e.g. liver, soft tissue, lung metastases) as published in the following two papers:&#13;
&#13;
1) Starmans et al. &amp;quot;Reproducible radiomics through automated machine learning validated on twelve clinical applications&amp;quot;, submitted, preprint available from https://arxiv.org/abs/2108.08618; and &#13;
2) Starmans et al. &amp;quot;The WORC* database: MRI and CT scans, segmentations, and clinical labels for 930 patients from six radiomics studies&amp;quot;, submitted, preprint available from https://doi.org/10.1101/2021.08.19.21262238.&#13;
&#13;
By downloading the data, you agree to the following Data Usage Policy: &#13;
&#13;
The dataset is freely available under the following license: https://xnat.bmia.nl/data/projects/worc/resources/License/files/WORC_data_license.pdf. This license dictates among others that:&#13;
&#13;
1) others can remix, adapt and build upon this work only non-commercially;&#13;
2) the data may not be redistributed.&#13;
3) when using (part of) this dataset, please cite the two above mentioned papers.&#13;
&#13;
See the license for all conditions.&#13;
&#13;
Code to download the data and reproduce the radiomics experiments as detailed in the above papers can be found at https://github.com/MStarmans91/WORCDatabase. Feature and cross-validation split files can be found in both the Github and here, see https://xnat.health-ri.nl/data/projects/worc/resources.&#13;
</xnat:description>
<xnat:keywords>radiomics, machine learning, oncology, segmentation, classification, artificial intelligence healthdata_catalog</xnat:keywords>
<xnat:resources>
<xnat:resource label="License" file_count="2" file_size="184350" URI="/xnatdata/archive/worc/resources/License/License_catalog.xml" xsi:type="xnat:resourceCatalog"/>
<xnat:resource label="cross_validation_splits" file_count="6" file_size="1025355" URI="/xnatdata/archive/worc/resources/cross_validation_splits/cross_validation_splits_catalog.xml" xsi:type="xnat:resourceCatalog"/>
<xnat:resource label="features" file_count="6" file_size="9729430" URI="/xnatdata/archive/worc/resources/features/features_catalog.xml" xsi:type="xnat:resourceCatalog"/>
</xnat:resources>
<xnat:studyProtocol ID="worc_xnat_subjectData" name="Subjects" data-type="xnat:subjectData" xsi:type="xnat:datatypeProtocol">
<xnat:definitions>
<xnat:definition ID="default" data-type="xnat:subjectData" project-specific="0">
<xnat:fields>
<xnat:field name="Notes" type="custom" datatype="string" required="0" xmlPath="xnat:subjectData/fields/field[name=notes]/field"/>
</xnat:fields>
</xnat:definition>
<xnat:definition ID="worc" data-type="xnat:subjectData" description="worc subject data" project-specific="1">
<xnat:fields>
<xnat:field name="Age" type="custom" datatype="integer" required="0" xmlPath="xnat:subjectData/fields/field[name=age]/field"/>
<xnat:field name="Sex" type="custom" datatype="string" required="0" xmlPath="xnat:subjectData/fields/field[name=sex]/field">
<xnat:possibleValues>
<xnat:possibleValue>M</xnat:possibleValue>
<xnat:possibleValue>F</xnat:possibleValue>
</xnat:possibleValues>
</xnat:field>
<xnat:field name="Dataset" type="custom" datatype="string" required="0" xmlPath="xnat:subjectData/fields/field[name=dataset]/field"/>
<xnat:field name="Diagnosis" type="custom" datatype="string" required="0" xmlPath="xnat:subjectData/fields/field[name=diagnosis]/field"/>
<xnat:field name="Diagnosis_binary" type="custom" datatype="integer" required="0" xmlPath="xnat:subjectData/fields/field[name=diagnosis_binary]/field">
<xnat:possibleValues>
<xnat:possibleValue>0</xnat:possibleValue>
<xnat:possibleValue>1</xnat:possibleValue>
</xnat:possibleValues>
</xnat:field>
<xnat:field name="Phenotype" type="custom" datatype="string" required="0" xmlPath="xnat:subjectData/fields/field[name=phenotype]/field"/>
</xnat:fields>
</xnat:definition>
</xnat:definitions>
</xnat:studyProtocol>
<xnat:studyProtocol ID="worc_xnat_qcAssessmentData" name="Auto QCs" data-type="xnat:qcAssessmentData" xsi:type="xnat:datatypeProtocol">
<xnat:definitions>
<xnat:definition ID="default" data-type="xnat:qcAssessmentData" project-specific="0"/>
</xnat:definitions>
</xnat:studyProtocol>
<xnat:PI>
<xnat:title>Dr.</xnat:title>
<xnat:firstname>Martijn</xnat:firstname>
<xnat:lastname>Starmans</xnat:lastname>
<xnat:institution>Erasmus MC</xnat:institution>
<xnat:department>BIGR</xnat:department>
<xnat:email>m.starmans@erasmusmc.nl</xnat:email>
<xnat:phone>107038875</xnat:phone>
</xnat:PI>
<xnat:investigators>
<xnat:investigator>
<xnat:title>Dr. ir.</xnat:title>
<xnat:firstname>Stefan</xnat:firstname>
<xnat:lastname>Klein</xnat:lastname>
<xnat:institution>Erasmus MC</xnat:institution>
<xnat:department>Radiology &amp;amp; Medical Informatics</xnat:department>
<xnat:email>s.klein@erasmusmc.nl</xnat:email>
<xnat:phone>+31-10-7043442</xnat:phone>
</xnat:investigator>
</xnat:investigators>
<xnat:custom_fields>{}</xnat:custom_fields>
</xnat:Project>
